springboot Spring Boot Gradle Plugin failing with Scala app with layered feature usage

We have been successfully using the Spring Boot Plugin to package our Scala app (which does not use Spring at all at runtime so its only used for packaging).

Now with 2.3 release we tried to use the layered feature and this one causes build to fail. The issue can be seen with this sample app

$ ./gradlew build

> Task :compileScala
9 warnings

> Task :bootJar FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':bootJar'.
> Could not resolve all dependencies for configuration ':incrementalScalaAnalysisFormain'.
   > Could not resolve org.scala-lang:scala-library:2.13.2.
     Required by:
         project :
      > Unable to find a matching variant of org.scala-lang:scala-library:2.13.2:
          - Variant 'compile' capability org.scala-lang:scala-library:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
              - Other attributes:
                  - Found org.gradle.category 'library' but wasn't required.
                  - Found org.gradle.libraryelements 'jar' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.
          - Variant 'enforced-platform-compile' capability org.scala-lang:scala-library-derived-enforced-platform:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
              - Other attributes:
                  - Found org.gradle.category 'enforced-platform' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.
          - Variant 'enforced-platform-runtime' capability org.scala-lang:scala-library-derived-enforced-platform:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
              - Other attributes:
                  - Found org.gradle.category 'enforced-platform' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.
          - Variant 'platform-compile' capability org.scala-lang:scala-library-derived-platform:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
              - Other attributes:
                  - Found org.gradle.category 'platform' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.
          - Variant 'platform-runtime' capability org.scala-lang:scala-library-derived-platform:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
              - Other attributes:
                  - Found org.gradle.category 'platform' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.
          - Variant 'runtime' capability org.scala-lang:scala-library:2.13.2:
              - Incompatible attribute:
                  - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
              - Other attributes:
                  - Found org.gradle.category 'library' but wasn't required.
                  - Found org.gradle.libraryelements 'jar' but wasn't required.
                  - Found org.gradle.status 'release' but wasn't required.

Without using layered option build works fine

$ ./gradlew build
Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD SUCCESSFUL in 18s
2 actionable tasks: 2 executed
$ java -jar build/libs/spring-book-scala-demo.jar 
hello world

Key points to note - Build works fine if I remove the layered option - Java version is 11.0.2 (fails with 1.8 also) - Gradle 6.3

Comment From: wilkinsona

Thanks for opening an issue after our chat on Gitter, @chetanmeh. As suspected the failure's caused by the layered jar support resolving configurations so that we can access dependencies' group ID and artifact ID. Here's the stacktrace:

org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':bootJar'.
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.lambda$executeIfValid$1(ExecuteActionsTaskExecuter.java:205)
        at org.gradle.internal.Try$Failure.ifSuccessfulOrElse(Try.java:263)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:203)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:184)
        at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:114)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:62)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:41)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:372)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:359)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:352)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.lambda$run$0(DefaultPlanExecutor.java:127)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:191)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:182)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:124)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
        at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
Caused by: org.gradle.api.artifacts.ResolveException: Could not resolve all dependencies for configuration ':incrementalScalaAnalysisFormain'.
        at org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration.getFailure(DefaultLenientConfiguration.java:148)
        at org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration.rethrowFailure(DefaultLenientConfiguration.java:162)
        at org.gradle.api.internal.artifacts.ivyservice.DefaultResolvedConfiguration.rethrowFailure(DefaultResolvedConfiguration.java:45)
        at org.gradle.api.internal.artifacts.ivyservice.DefaultResolvedConfiguration.getResolvedArtifacts(DefaultResolvedConfiguration.java:83)
        at org.gradle.api.internal.artifacts.ivyservice.ErrorHandlingConfigurationResolver$ErrorHandlingResolvedConfiguration.getResolvedArtifacts(ErrorHandlingConfigurationResolver.java:323)
        at org.springframework.boot.gradle.tasks.bundling.LayerResolver$ResolvedConfigurationDependencies.<init>(LayerResolver.java:137)
        at org.springframework.boot.gradle.tasks.bundling.LayerResolver$ResolvedDependencies.processConfiguration(LayerResolver.java:113)
        at org.springframework.boot.gradle.tasks.bundling.LayerResolver$ResolvedDependencies.<init>(LayerResolver.java:106)
        at org.springframework.boot.gradle.tasks.bundling.LayerResolver.<init>(LayerResolver.java:58)
        at org.springframework.boot.gradle.tasks.bundling.BootJar.createCopyAction(BootJar.java:106)
        at org.gradle.api.tasks.AbstractCopyTask.copy(AbstractCopyTask.java:136)
        at org.springframework.boot.gradle.tasks.bundling.BootJar.copy(BootJar.java:100)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:104)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:49)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:42)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:727)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:694)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$3.run(ExecuteActionsTaskExecuter.java:568)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:553)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:536)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$300(ExecuteActionsTaskExecuter.java:109)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.executeWithPreviousOutputFiles(ExecuteActionsTaskExecuter.java:276)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:265)
        at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$1(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:67)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:36)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:49)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:34)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:43)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
        at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:34)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:44)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:54)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:38)
        at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
        at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:159)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:72)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:43)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:44)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:33)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:92)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:85)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:39)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:76)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:94)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:79)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:53)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:74)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.lambda$execute$2(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:34)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:39)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:40)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:28)
        at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:192)
        ... 30 more
Caused by: org.gradle.internal.resolve.ModuleVersionResolveException: Could not resolve org.scala-lang:scala-library:2.13.2.
Required by:
    project :
Caused by: org.gradle.internal.component.NoMatchingConfigurationSelectionException: Unable to find a matching variant of org.scala-lang:scala-library:2.13.2:
  - Variant 'compile' capability org.scala-lang:scala-library:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
      - Other attributes:
          - Found org.gradle.category 'library' but wasn't required.
          - Found org.gradle.libraryelements 'jar' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
  - Variant 'enforced-platform-compile' capability org.scala-lang:scala-library-derived-enforced-platform:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
      - Other attributes:
          - Found org.gradle.category 'enforced-platform' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
  - Variant 'enforced-platform-runtime' capability org.scala-lang:scala-library-derived-enforced-platform:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
      - Other attributes:
          - Found org.gradle.category 'enforced-platform' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
  - Variant 'platform-compile' capability org.scala-lang:scala-library-derived-platform:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-api'.
      - Other attributes:
          - Found org.gradle.category 'platform' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
  - Variant 'platform-runtime' capability org.scala-lang:scala-library-derived-platform:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
      - Other attributes:
          - Found org.gradle.category 'platform' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
  - Variant 'runtime' capability org.scala-lang:scala-library:2.13.2:
      - Incompatible attribute:
          - Required org.gradle.usage 'incremental-analysis' and found incompatible value 'java-runtime'.
      - Other attributes:
          - Found org.gradle.category 'library' but wasn't required.
          - Found org.gradle.libraryelements 'jar' but wasn't required.
          - Found org.gradle.status 'release' but wasn't required.
        at org.gradle.internal.component.model.AttributeConfigurationSelector.selectConfigurationUsingAttributeMatching(AttributeConfigurationSelector.java:92)
        at org.gradle.internal.component.model.LocalComponentDependencyMetadata.selectConfigurations(LocalComponentDependencyMetadata.java:143)
        at org.gradle.internal.component.local.model.DslOriginDependencyMetadataWrapper.selectConfigurations(DslOriginDependencyMetadataWrapper.java:62)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.calculateTargetConfigurations(EdgeState.java:253)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.attachToTargetConfigurations(EdgeState.java:153)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.attachToTargetRevisionsSerially(DependencyGraphBuilder.java:363)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolveEdges(DependencyGraphBuilder.java:248)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.traverseGraph(DependencyGraphBuilder.java:185)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolve(DependencyGraphBuilder.java:144)
        at org.gradle.api.internal.artifacts.ivyservice.resolveengine.DefaultArtifactDependencyResolver.resolve(DefaultArtifactDependencyResolver.java:127)
        at org.gradle.api.internal.artifacts.ivyservice.DefaultConfigurationResolver.resolveGraph(DefaultConfigurationResolver.java:174)
        at org.gradle.api.internal.artifacts.ivyservice.ShortCircuitEmptyConfigurationResolver.resolveGraph(ShortCircuitEmptyConfigurationResolver.java:86)
        at org.gradle.api.internal.artifacts.ivyservice.ErrorHandlingConfigurationResolver.resolveGraph(ErrorHandlingConfigurationResolver.java:74)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$1.run(DefaultConfiguration.java:620)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveGraphIfRequired(DefaultConfiguration.java:611)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.lambda$resolveExclusively$4(DefaultConfiguration.java:592)
        at org.gradle.api.internal.project.DefaultProjectStateRegistry$SafeExclusiveLockImpl.withLock(DefaultProjectStateRegistry.java:289)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveExclusively(DefaultConfiguration.java:590)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveToStateOrLater(DefaultConfiguration.java:576)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1900(DefaultConfiguration.java:141)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getSelectedArtifacts(DefaultConfiguration.java:1248)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.visitContents(DefaultConfiguration.java:1239)
        at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:1228)
        at org.gradle.api.internal.file.CompositeFileCollection.getFiles(CompositeFileCollection.java:78)
        at org.gradle.api.internal.file.CompositeFileCollection.getFiles(CompositeFileCollection.java:56)
        at org.gradle.language.scala.tasks.AbstractScalaCompile.resolveAnalysisMappingsForOtherProjects(AbstractScalaCompile.java:161)
        at org.gradle.language.scala.tasks.AbstractScalaCompile.configureIncrementalCompilation(AbstractScalaCompile.java:139)
        at org.gradle.language.scala.tasks.AbstractScalaCompile.compile(AbstractScalaCompile.java:100)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:104)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:49)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:42)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:727)
        at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:694)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$3.run(ExecuteActionsTaskExecuter.java:568)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:553)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:536)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$300(ExecuteActionsTaskExecuter.java:109)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.executeWithPreviousOutputFiles(ExecuteActionsTaskExecuter.java:276)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:265)
        at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$1(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:33)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:67)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:36)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:49)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:34)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:43)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
        at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:34)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:44)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:54)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:38)
        at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
        at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:159)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:72)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:43)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:44)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:33)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:92)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:85)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:39)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:76)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:94)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:79)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:53)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:74)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.lambda$execute$2(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:34)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:39)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:40)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:28)
        at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:192)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:184)
        at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:114)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:62)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:41)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:372)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:359)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:352)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.lambda$run$0(DefaultPlanExecutor.java:127)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:191)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:182)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:124)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
        at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)

One or more of the dependencies in the incrementalScalaAnalysisFormain configuration appear to be faulty. The problem can be reproduced by attempting to resolve that configuration. Running ./gradlew resolve with the following build.gradle fails in the same way:

plugins {
    id "scala"
}

repositories {
    mavenCentral()
}

dependencies {
    compile "org.scala-lang:scala-library:2.13.2"
    compile "org.rogach:scallop_2.13:3.3.1"
}

task resolve {
    doFirst {
        configurations.incrementalScalaAnalysisFormain.resolve()
    }
}

This appears to be an issue with Gradle's Scala support. It's creating a configuration that cannot be resolved. The problem's being tracked by https://github.com/gradle/gradle/issues/6854. From that issue, you can work around the problem with the following:

configurations.all {
    if (name.startsWith("incrementalScalaAnalysis")) {
        extendsFrom = []
    }
}

With this added to your sample, bootJar builds successfully.

Comment From: chetanmeh

Thanks a lot @wilkinsona for the prompt response and the workaround. Would give that try!