Pandas version checks
- [X] I have checked that the issue still exists on the latest versions of the docs on
mainhere
Location of the documentation
https://pandas.pydata.org/docs/dev/development/contributing_environment.html#creating-a-python-environment
Documentation problem
My machine is a MacBookPro with chip Apple M1 Pro, I'm using conda, and I created an environment without Docker. I checked my version of xcode-select and it's 2395 which seems to be the latest version. I followed the instructions in "Creating a Python environment". When I ran python -m pip install -e . --no-build-isolation --no-use-pep517 I got the following output with the following errors:
(pandas-dev) ➜ pandas git:(main) python -m pip install -e . --no-build-isolation --no-use-pep517
Looking in indexes: https://pypi.org/simple, https://maren.westermann:****@repos.mytaxi.com/artifactory/api/pypi/pypi/simple
Obtaining file:///Users/maren/open_source/pandas
Preparing metadata (setup.py) ... done
Requirement already satisfied: python-dateutil>=2.8.1 in /Users/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.29904.g6db95e7) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in /Users/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.29904.g6db95e7) (2022.1)
Requirement already satisfied: numpy>=1.20.3 in /Users/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.29904.g6db95e7) (1.22.4)
Requirement already satisfied: six>=1.5 in /Users/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from python-dateutil>=2.8.1->pandas==0+untagged.29904.g6db95e7) (1.16.0)
Installing collected packages: pandas
Attempting uninstall: pandas
Found existing installation: pandas 1.4.3
Uninstalling pandas-1.4.3:
Successfully uninstalled pandas-1.4.3
Running setup.py develop for pandas
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
xarray 2022.6.0 requires pandas>=1.2, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
statsmodels 0.13.2 requires pandas>=0.25, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
seaborn 0.11.2 requires pandas>=0.23, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
pyreadstat 1.1.9 requires pandas>=1.2.0, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
pandas-gbq 0.17.6 requires pandas>=0.24.2, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
pandas-datareader 0.10.0 requires pandas>=0.23, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
mapclassify 2.4.3 requires pandas>=1.0, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
geopandas 0.11.1 requires pandas>=1.0.0, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
fastparquet 0.8.1 requires pandas>=1.1.0, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
db-dtypes 1.0.3 requires pandas<2.0dev,>=0.24.2, but you have pandas 0+untagged.29904.g6db95e7 which is incompatible.
Successfully installed pandas-0+untagged.29904.g6db95e7
In the documentation for the development version name the example 0.22.0.dev0+29.g4ad6d4d74 is given which seems quite old. I think the documentation should be updated here 1. because the current naming system doesn't seem to follow the old convention of including the version number in the name of the installed pandas package and 2. given the error messages it's not clear if the installation process worked correctly.
I ran pytest pandas to check if everything works correctly and the result was the following:
4445 failed, 179821 passed, 1715 skipped, 5498 xfailed, 11 xpassed, 221 warnings, 168 errors
I'm not sure if the number of test failures is due to incorrect installation or if the failing tests just need to be fixed.
This is the content of my pandas-dev conda environment:
# packages in environment at /Users/maren/mambaforge/envs/pandas-dev:
#
# Name Version Build Channel
abseil-cpp 20210324.2 hbdafb3b_0 conda-forge
aiobotocore 1.4.1 pyhd8ed1ab_0 conda-forge
aiohttp 3.8.1 py38h33210d7_1 conda-forge
aioitertools 0.10.0 pyhd8ed1ab_0 conda-forge
aiosignal 1.2.0 pyhd8ed1ab_0 conda-forge
alabaster 0.7.12 py_0 conda-forge
anyio 3.6.1 pyhd8ed1ab_1 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h33210d7_2 conda-forge
arrow-cpp 8.0.1 py38hf3a2c03_0_cpu conda-forge
asn1crypto 1.5.1 pyhd8ed1ab_0 conda-forge
asttokens 2.0.5 pyhd8ed1ab_0 conda-forge
asv 0.5.1 py38h396b780_0 conda-forge
async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
aws-c-cal 0.5.11 h4530763_0 conda-forge
aws-c-common 0.6.2 h3422bc3_0 conda-forge
aws-c-event-stream 0.2.7 h9972306_13 conda-forge
aws-c-io 0.10.5 hea86ef8_0 conda-forge
aws-checksums 0.1.11 h487e1a8_7 conda-forge
aws-sam-translator 1.49.0 pyhd8ed1ab_0 conda-forge
aws-sdk-cpp 1.8.186 hb86bbe7_3 conda-forge
aws-xray-sdk 2.10.0 pyhd8ed1ab_0 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
black 22.3.0 pyhd8ed1ab_0 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blinker 1.4 py_1 conda-forge
blosc 1.21.1 hd414afc_3 conda-forge
bokeh 2.4.3 pyhd8ed1ab_1 conda-forge
boost-cpp 1.74.0 h1cb353e_8 conda-forge
boto3 1.17.106 pyhd8ed1ab_0 conda-forge
botocore 1.20.106 pyhd8ed1ab_0 conda-forge
bottleneck 1.3.5 py38hd91e067_0 conda-forge
branca 0.5.0 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h1c322ee_7 conda-forge
brotli-bin 1.0.9 h1c322ee_7 conda-forge
brotlipy 0.7.0 py38h33210d7_1004 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
c-compiler 1.4.2 h50ab0ce_0 conda-forge
ca-certificates 2022.6.15 h4653dfc_0 conda-forge
cachetools 5.2.0 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 h3e596be_1011 conda-forge
cctools 973.0.1 h43ef6ec_10 conda-forge
cctools_osx-arm64 973.0.1 h8e51184_10 conda-forge
certifi 2022.6.15 py38h10201cd_0 conda-forge
cffi 1.15.1 py38h0e10f82_0 conda-forge
cfgv 3.3.1 pyhd8ed1ab_0 conda-forge
cfitsio 4.1.0 hd4f5c17_0 conda-forge
cfn-lint 0.61.4 pyhd8ed1ab_0 conda-forge
cftime 1.6.1 py38hd91e067_0 conda-forge
charset-normalizer 2.1.0 pyhd8ed1ab_0 conda-forge
clang 13.0.1 hce30654_0 conda-forge
clang-13 13.0.1 default_h2cfa9b4_0 conda-forge
clang_osx-arm64 13.0.1 hc97ff27_2 conda-forge
clangxx 13.0.1 default_hf584372_0 conda-forge
clangxx_osx-arm64 13.0.1 h15d2725_2 conda-forge
click 8.1.3 py38h10201cd_0 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.7.2 pyhd8ed1ab_1 conda-forge
cloudpickle 2.1.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
compiler-rt 13.0.1 h94c6b0c_0 conda-forge
compiler-rt_osx-arm64 13.0.1 h44bac85_0 conda-forge
coverage 6.4.3 py38hbe6f924_0 conda-forge
cpplint 1.6.0 pyhd8ed1ab_0 conda-forge
cramjam 2.5.0 py38h76609ba_0 conda-forge
cryptography 37.0.4 py38h530bd25_0 conda-forge
curl 7.83.1 h2fcd78c_0 conda-forge
cxx-compiler 1.4.2 hf86a087_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.32 py38h396b780_0 conda-forge
cytoolz 0.12.0 py38he5c2ac2_0 conda-forge
dask 2022.8.0 pyhd8ed1ab_0 conda-forge
dask-core 2022.8.0 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
db-dtypes 1.0.3 pyhd8ed1ab_0 conda-forge
debugpy 1.6.0 py38hea55cf5_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
distlib 0.3.5 pyhd8ed1ab_0 conda-forge
distributed 2022.8.0 pyhd8ed1ab_0 conda-forge
docker-py 5.0.3 py38h10201cd_2 conda-forge
docker-pycreds 0.4.0 py_0 conda-forge
docutils 0.17.1 py38h10201cd_2 conda-forge
doit 0.36.0 pypi_0 pypi
ecdsa 0.18.0 pyhd8ed1ab_1 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.0.1 py_1001 conda-forge
execnet 1.9.0 pyhd8ed1ab_0 conda-forge
executing 0.9.1 pyhd8ed1ab_0 conda-forge
expat 2.4.8 h6b3803e_0 conda-forge
fastavro 1.5.4 py38he5c2ac2_0 conda-forge
fastparquet 0.8.1 py38hd91e067_0 conda-forge
feedparser 6.0.10 pyhd8ed1ab_0 conda-forge
filelock 3.8.0 pyhd8ed1ab_0 conda-forge
fiona 1.8.21 py38h6cbfdb8_2 conda-forge
flake8 4.0.1 pyhd8ed1ab_2 conda-forge
flake8-bugbear 21.3.2 pyhd8ed1ab_0 conda-forge
flake8-comprehensions 3.7.0 pyhd8ed1ab_0 conda-forge
flask 2.2.2 pyhd8ed1ab_0 conda-forge
flask_cors 3.0.10 pyhd3deb0d_0 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
folium 0.12.1.post1 pyhd8ed1ab_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 hfb34624_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.34.4 py38he5c2ac2_0 conda-forge
freetype 2.10.4 hd633e50_2 conda-forge
freexl 1.0.6 h27ca646_0 conda-forge
frozenlist 1.3.1 py38hbe6f924_0 conda-forge
fsspec 2021.11.0 pyhd8ed1ab_0 conda-forge
gcsfs 2021.11.0 pyhd8ed1ab_0 conda-forge
gdal 3.5.1 py38hd5b0be9_1 conda-forge
geopandas 0.11.1 pyhd8ed1ab_0 conda-forge
geopandas-base 0.11.1 pyha770c72_0 conda-forge
geos 3.11.0 h9a09cb3_0 conda-forge
geotiff 1.7.1 hc898e3f_3 conda-forge
gettext 0.19.8.1 h049c9fb_1008 conda-forge
gflags 2.2.2 hc88da5d_1004 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
gitdb 4.0.9 pyhd8ed1ab_0 conda-forge
gitpython 3.1.27 pyhd8ed1ab_0 conda-forge
glog 0.6.0 h6da1cb0_0 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gmpy2 2.1.2 py38hc185ee4_0 conda-forge
google-api-core 2.8.2 pyhd8ed1ab_0 conda-forge
google-api-core-grpc 2.8.2 hd8ed1ab_0 conda-forge
google-auth 2.10.0 pyh6c4a22f_0 conda-forge
google-auth-oauthlib 0.5.2 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery 3.2.0 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery-core 3.2.0 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery-storage 2.11.0 pyh6c4a22f_0 conda-forge
google-cloud-bigquery-storage-core 2.11.0 pyh6c4a22f_0 conda-forge
google-cloud-core 2.3.2 pyhd8ed1ab_0 conda-forge
google-cloud-storage 2.4.0 pyh6c4a22f_0 conda-forge
google-crc32c 1.1.2 py38ha01337b_3 conda-forge
google-resumable-media 2.3.3 pyhd8ed1ab_0 conda-forge
googleapis-common-protos 1.56.4 py38h10201cd_0 conda-forge
graphql-core 3.2.1 pyhd8ed1ab_0 conda-forge
greenlet 1.1.2 py38hea55cf5_2 conda-forge
grpc-cpp 1.45.2 h6e39ad6_4 conda-forge
grpcio 1.46.3 py38hd51562d_0 conda-forge
grpcio-status 1.46.3 pyhd8ed1ab_0 conda-forge
hdf4 4.2.15 h0ef36ac_3 conda-forge
hdf5 1.12.1 nompi_hf9525e8_104 conda-forge
heapdict 1.0.1 py_0 conda-forge
html5lib 1.1 pyh9f0ad1d_0 conda-forge
hypothesis 6.47.1 pyhd8ed1ab_0 conda-forge
icu 70.1 h6b3803e_0 conda-forge
identify 2.5.3 pyhd8ed1ab_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.11.4 py38h10201cd_0 conda-forge
importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge
importlib_resources 3.3.1 pyhd8ed1ab_1 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 6.15.1 pyh736e0ef_0 conda-forge
ipython 8.4.0 py38h10201cd_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.7.1 pyhd8ed1ab_0 conda-forge
isort 5.10.1 pyhd8ed1ab_0 conda-forge
itsdangerous 2.1.2 pyhd8ed1ab_0 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.0.3 pypi_0 pypi
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9e he4db4b2_2 conda-forge
jschema-to-python 1.2.3 pyhd8ed1ab_0 conda-forge
json-c 0.16 hc449e50_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsondiff 2.0.0 pyhd8ed1ab_0 conda-forge
jsonpatch 1.32 pyhd8ed1ab_0 conda-forge
jsonpickle 2.2.0 pyhd8ed1ab_0 conda-forge
jsonpointer 2.0 py_0 conda-forge
jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge
junit-xml 1.9 pyh9f0ad1d_0 conda-forge
jupyter_client 7.3.4 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py38h10201cd_0 conda-forge
jupyter_server 1.18.1 pyhd8ed1ab_0 conda-forge
jupyterlab 3.4.5 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.15.0 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 1.1.1 pyhd8ed1ab_0 conda-forge
jupyterlite 0.1.0b10 pypi_0 pypi
kealib 1.4.14 hca62043_4 conda-forge
kiwisolver 1.4.4 py38haa2428a_0 conda-forge
krb5 1.19.3 hf9b2bbe_0 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
ld64 609 h954701c_10 conda-forge
ld64_osx-arm64 609 h6ce2ded_10 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libblas 3.9.0 16_osxarm64_openblas conda-forge
libbrotlicommon 1.0.9 h1c322ee_7 conda-forge
libbrotlidec 1.0.9 h1c322ee_7 conda-forge
libbrotlienc 1.0.9 h1c322ee_7 conda-forge
libcblas 3.9.0 16_osxarm64_openblas conda-forge
libclang-cpp13 13.0.1 default_h2cfa9b4_0 conda-forge
libcrc32c 1.1.2 hbdafb3b_0 conda-forge
libcst 0.4.7 py38h1101ec3_0 conda-forge
libcurl 7.83.1 h2fcd78c_0 conda-forge
libcxx 14.0.6 h04bba0f_0 conda-forge
libdap4 3.20.6 h8510809_2 conda-forge
libdeflate 1.13 h57fd34a_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libevent 2.1.10 hbae9a57_4 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgdal 3.5.1 h125b1ee_1 conda-forge
libgfortran 5.0.0.dev0 11_0_1_hf114ba7_23 conda-forge
libgfortran5 11.0.1.dev0 hf114ba7_23 conda-forge
libglib 2.72.1 ha1047ec_0 conda-forge
libgoogle-cloud 1.40.2 h46da962_0 conda-forge
libiconv 1.16 h642e427_0 conda-forge
libkml 1.3.0 h893ab4d_1014 conda-forge
liblapack 3.9.0 16_osxarm64_openblas conda-forge
libllvm11 11.1.0 h93073aa_3 conda-forge
libllvm13 13.0.1 hfd59cb2_2 conda-forge
libnetcdf 4.8.1 nompi_h96a3436_102 conda-forge
libnghttp2 1.47.0 he723fca_0 conda-forge
libopenblas 0.3.21 openmp_hcb59c3b_0 conda-forge
libpng 1.6.37 h2c9beb0_3 conda-forge
libpq 14.4 h8ab49ba_0 conda-forge
libprotobuf 3.20.1 h332123e_0 conda-forge
librttopo 1.1.0 h275bb25_11 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libspatialindex 1.9.3 hbdafb3b_4 conda-forge
libspatialite 5.0.1 h47b1232_18 conda-forge
libssh2 1.10.0 hb80f160_2 conda-forge
libthrift 0.16.0 h95ff8ae_1 conda-forge
libtiff 4.4.0 hd6ca8d7_3 conda-forge
libutf8proc 2.7.0 h3422bc3_0 conda-forge
libwebp 1.2.3 h1e26fe3_1 conda-forge
libwebp-base 1.2.3 he4db4b2_2 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.9.14 h035c1df_3 conda-forge
libxslt 1.1.35 ha8fb468_0 conda-forge
libzip 1.9.2 h8caee39_0 conda-forge
libzlib 1.2.12 ha287fd2_2 conda-forge
llvm-openmp 14.0.4 hd125106_0 conda-forge
llvm-tools 13.0.1 hfd59cb2_2 conda-forge
llvmlite 0.38.1 py38h8a5a59d_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lxml 4.9.1 py38he5c2ac2_0 conda-forge
lz4 4.0.0 py38h6b08218_2 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
mapclassify 2.4.3 pyhd8ed1ab_0 conda-forge
markdown 3.4.1 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.1 py38h33210d7_1 conda-forge
matplotlib 3.5.2 py38h150bfb4_1 conda-forge
matplotlib-base 3.5.2 py38hd7f6e49_1 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mccabe 0.6.1 py_1 conda-forge
mistune 0.8.4 py38hea4295b_1005 conda-forge
moto 3.1.16 pyhd8ed1ab_0 conda-forge
mpc 1.2.1 h309154c_0 conda-forge
mpfr 4.1.0 h6d7a090_1 conda-forge
msgpack-python 1.0.4 py38haa2428a_0 conda-forge
multidict 6.0.2 py38h33210d7_1 conda-forge
munch 2.5.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy 0.971 py38he5c2ac2_0 conda-forge
mypy_extensions 0.4.3 py38h10201cd_5 conda-forge
natsort 8.1.0 pyhd8ed1ab_0 conda-forge
nbclassic 0.4.3 pyhd8ed1ab_0 conda-forge
nbclient 0.6.6 pyhd8ed1ab_0 conda-forge
nbconvert 6.5.2 pyhd8ed1ab_0 conda-forge
nbconvert-core 6.5.2 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 6.5.2 pyhd8ed1ab_0 conda-forge
nbformat 5.4.0 pyhd8ed1ab_0 conda-forge
nbsphinx 0.8.9 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h07bb92c_1 conda-forge
nest-asyncio 1.5.5 pyhd8ed1ab_0 conda-forge
networkx 2.8.5 pyhd8ed1ab_0 conda-forge
ninja 1.11.0 hf86a087_0 conda-forge
nodeenv 1.7.0 pyhd8ed1ab_0 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
notebook-shim 0.1.0 pyhd8ed1ab_0 conda-forge
nspr 4.32 hbdafb3b_1 conda-forge
nss 3.78 h1483a63_0 conda-forge
numba 0.55.2 py38h25e2f74_0 conda-forge
numexpr 2.8.3 py38h6724fcd_0 conda-forge
numpy 1.22.4 py38he1fcd3f_0 conda-forge
numpydoc 1.4.0 pyhd8ed1ab_1 conda-forge
oauthlib 3.2.0 pyhd8ed1ab_0 conda-forge
odfpy 1.4.1 py_0 conda-forge
openapi-schema-validator 0.2.3 pyhd8ed1ab_0 conda-forge
openapi-spec-validator 0.4.0 pyhd8ed1ab_1 conda-forge
openjpeg 2.4.0 h062765e_1 conda-forge
openpyxl 3.0.9 pyhd8ed1ab_0 conda-forge
openssl 1.1.1q ha287fd2_0 conda-forge
orc 1.7.5 h96f55be_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 0+untagged.29914.g08fd9c0 dev_0 <develop>
pandas-datareader 0.10.0 pyh6c4a22f_0 conda-forge
pandas-dev-flaker 0.5.0 pyhd8ed1ab_0 conda-forge
pandas-gbq 0.17.6 pyh6c4a22f_0 conda-forge
pandoc 2.19 hce30654_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parquet-cpp 1.5.1 2 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.2.0 pyhd8ed1ab_0 conda-forge
pathspec 0.9.0 pyhd8ed1ab_0 conda-forge
patsy 0.5.2 pyhd8ed1ab_0 conda-forge
pbr 5.9.0 pyhd8ed1ab_0 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py38h3852883_0 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
platformdirs 2.5.2 pyhd8ed1ab_1 conda-forge
pluggy 1.0.0 py38h10201cd_3 conda-forge
poppler 22.04.0 hadf1f10_1 conda-forge
poppler-data 0.4.11 hd8ed1ab_0 conda-forge
postgresql 14.4 heaa1073_0 conda-forge
pre-commit 2.20.0 py38h10201cd_0 conda-forge
proj 9.0.1 h4c79c2b_1 conda-forge
prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.30 pyha770c72_0 conda-forge
proto-plus 1.20.6 pyhd8ed1ab_0 conda-forge
protobuf 3.20.1 py38h396b780_0 conda-forge
psutil 5.9.1 py38he5c2ac2_0 conda-forge
psycopg2 2.9.3 py38hbfad3ef_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
py 1.11.0 pyh6c4a22f_0 conda-forge
pyarrow 8.0.1 py38h535b32c_0_cpu conda-forge
pyasn1 0.4.8 py_0 conda-forge
pyasn1-modules 0.2.7 py_0 conda-forge
pycodestyle 2.8.0 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydata-google-auth 1.4.0 pyhd8ed1ab_0 conda-forge
pydata-sphinx-theme 0.8.0 pyhd8ed1ab_0 conda-forge
pyflakes 2.4.0 pyhd8ed1ab_0 conda-forge
pygments 2.12.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.4.0 pyhd8ed1ab_0 conda-forge
pymysql 1.0.2 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyproj 3.3.1 py38hb16ab4f_1 conda-forge
pyreadstat 1.1.9 py38ha509820_0 conda-forge
pyrsistent 0.18.1 py38h33210d7_1 conda-forge
pysocks 1.7.1 py38h10201cd_5 conda-forge
pytables 3.7.0 py38h37503a7_0 conda-forge
pytest 7.1.2 py38h10201cd_0 conda-forge
pytest-asyncio 0.19.0 pyhd8ed1ab_0 conda-forge
pytest-cov 3.0.0 pyhd8ed1ab_0 conda-forge
pytest-cython 0.2.0 pyhd8ed1ab_0 conda-forge
pytest-forked 1.4.0 pyhd8ed1ab_0 conda-forge
pytest-xdist 2.5.0 pyhd8ed1ab_0 conda-forge
python 3.8.13 h7e095e3_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.1 pyhd8ed1ab_0 conda-forge
python-jose 3.3.0 pyh6c4a22f_1 conda-forge
python-snappy 0.6.0 py38hb0889cc_2 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytorch 1.12.1 cpu_py38h7afd69f_0 conda-forge
pytz 2022.1 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pyupgrade 2.37.3 pyhd8ed1ab_0 conda-forge
pyxlsb 1.0.9 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py38h33210d7_4 conda-forge
pyzmq 23.2.0 py38hc61cae3_0 conda-forge
re2 2022.06.01 h9a09cb3_0 conda-forge
readline 8.1.2 h46ed386_0 conda-forge
requests 2.28.1 pyhd8ed1ab_0 conda-forge
requests-oauthlib 1.3.1 pyhd8ed1ab_0 conda-forge
responses 0.21.0 pyhd8ed1ab_0 conda-forge
rsa 4.9 pyhd8ed1ab_0 conda-forge
rtree 1.0.0 py38hb34dff0_1 conda-forge
s3fs 2021.11.0 pyhd8ed1ab_0 conda-forge
s3transfer 0.4.2 pyhd8ed1ab_0 conda-forge
sarif-om 1.0.4 pyhd8ed1ab_0 conda-forge
scikit-learn 1.1.2 py38h6e93f71_0 conda-forge
scipy 1.9.0 py38h4f188a7_0 conda-forge
seaborn 0.11.2 hd8ed1ab_0 conda-forge
seaborn-base 0.11.2 pyhd8ed1ab_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 63.4.2 py38h10201cd_0 conda-forge
sgmllib3k 1.0.0 pyh9f0ad1d_0 conda-forge
shapely 1.8.2 py38h7253250_3 conda-forge
sigtool 0.1.3 h7747421_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleef 3.5.1 h156473d_2 conda-forge
smmap 3.0.5 pyh44b312d_0 conda-forge
snappy 1.1.9 h39c3846_1 conda-forge
sniffio 1.2.0 py38h10201cd_3 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sphinx 4.5.0 pyh6c4a22f_0 conda-forge
sphinx-copybutton 0.5.0 pyhd8ed1ab_0 conda-forge
sphinx-panels 0.6.0 pyhd8ed1ab_0 conda-forge
sphinx-toggleprompt 0.2.0 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
sqlalchemy 1.4.40 py38hbe6f924_0 conda-forge
sqlite 3.39.2 h40dfcc0_0 conda-forge
sshpubkeys 3.3.1 pyhd8ed1ab_0 conda-forge
stack_data 0.3.0 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py38hd91e067_0 conda-forge
tabulate 0.8.10 pyhd8ed1ab_0 conda-forge
tapi 1100.0.11 he4954df_0 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
terminado 0.15.0 py38h10201cd_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tiledb 2.9.4 hdd33e7b_0 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 he1e0b03_0 conda-forge
tokenize-rt 4.2.1 pyhd8ed1ab_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.1 py38h33210d7_3 conda-forge
tqdm 4.64.0 pyhd8ed1ab_0 conda-forge
traitlets 5.3.0 pyhd8ed1ab_0 conda-forge
typed-ast 1.5.4 py38he5c2ac2_0 conda-forge
types-pymysql 1.0.19 pyhd8ed1ab_0 conda-forge
types-python-dateutil 2.8.19 pyhd8ed1ab_0 conda-forge
types-pytz 2022.1.2 pyhd8ed1ab_0 conda-forge
types-setuptools 63.4.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.3.0 hd8ed1ab_0 conda-forge
typing_extensions 4.3.0 pyha770c72_0 conda-forge
typing_inspect 0.7.1 pyh6c4a22f_0 conda-forge
tzcode 2022a h1c322ee_0 conda-forge
tzdata 2022a h191b570_0 conda-forge
ukkonen 1.0.1 py38h0f71543_2 conda-forge
unicodedata2 14.0.0 py38h33210d7_1 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
virtualenv 20.16.3 py38h10201cd_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.3.3 pyhd8ed1ab_0 conda-forge
werkzeug 2.2.2 pyhd8ed1ab_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.6.1 pyha770c72_0 conda-forge
wrapt 1.14.1 py38he5c2ac2_0 conda-forge
xarray 2022.6.0 pyhd8ed1ab_1 conda-forge
xerces-c 3.2.3 h1b0b642_5 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xlsxwriter 3.0.3 pyhd8ed1ab_0 conda-forge
xlwt 1.3.0 py_1 conda-forge
xmltodict 0.13.0 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xyzservices 2022.6.0 pyhd8ed1ab_0 conda-forge
xz 5.2.5 h642e427_1 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
yarl 1.7.2 py38h33210d7_2 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zict 2.2.0 pyhd8ed1ab_0 conda-forge
zipp 3.8.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 ha287fd2_2 conda-forge
zstandard 0.18.0 py38he5c2ac2_0 conda-forge
zstd 1.5.2 hd705a24_3 conda-forge
Suggested fix for documentation
- Give a newer example of the pandas development version naming convention
- Include that errors during the installation process are expected due to currently unresolved dependency conflict (unless this is due to an incorrect installation process on my machine).
- Include in the documentation under "Running the test suite"that there is currently a number of test failures when running
pytest pandasand that these need to be fixed (unless this is due to an incorrect installation process on my machine).
Comment From: marenwestermann
ping @noatamir
Comment From: marenwestermann
I just removed my company's pypi from the list of indexes but the errors in the installation process remain the same. After removing my company's pypi I ran from my pandas-dev conda environment:
make clean
python setup.py build_ext -j 4
python -m pip install -e . --no-build-isolation --no-use-pep517
Comment From: phofl
Hi, thanks for your report.
Can you post a couple of failures? There is definitely something off with yout installation, the test suite is passing in general, except one that is currently failing due to a dependency update
The cython extensions build correctly?
What's the commit you are on?
Comment From: MarcoGorelli
Hey
Regarding the version, I get
>>> pandas.__version__
'1.5.0.dev0+1277.g08fd9c0c0c'
which still looks like the old pattern (in the docs)
Could you also show the output of git describe please? Did you do a full clone of the pandas repo?
Comment From: noatamir
Hi 👋 @marenwestermann 1. I'm also not facing issues with version name, installation errors, or failed tests. Happy to help understand what we're doing different to resolve your issues and improve the docs as needed ☺️ 2. Personally, I think it's unrealistic to keep an up-to-date number of test failing in the docs (not sure if that was implied?! Maybe that's not what you meant 🙇). It might be better to just set an expectation that there could always be some number of tests failing, since pandas is under constant development. And this number can also change from one day to the next as folks make changes. WDYT
Comment From: phofl
If we want to mention potentially failing test, I would word this in a way that makes it clear that new releases might cause this (so that people know what to check if they want to debug)
Comment From: jorisvandenbossche
Regarding the "0+untagged.29914.g08fd9c0" version number, would it be possible that you cloned the pandas git repo with a limited "depth"? Since our version numbers are based on git tags, to have a proper number you need at least the last release in your git history.
Comment From: marenwestermann
Thanks a lot for all your input!
would it be possible that you cloned the pandas git repo with a limited "depth"?
No, I didn't clone the pandas repo with a limited depth.
I synced my copy with upstream/main and I am now on commit 60b4400. The output of git describe is v1.5.0.dev0-1285-g60b4400491. I followed the instructions in "Creating a Python environment" again and this time I got the following error:
➜ pandas git:(main) conda env create -f environment.yml
Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies. Conda may not use the correct pip to install your packages, and they may end up in the wrong place. Please add an explicit pip dependency. I'm adding one for you, but still nagging you.
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- pandoc
I investigated the issue and the problem comes from conda-forge/pandoc-feedstock. The support for my processor (osx-arm64) has currently been disabled. It worked previously since I happened to install my local environment exactly during the period where the binary of the package was available on conda-forge.
I then moved pandoc to the pip install section and also added pip to the list of environment packages. I did this by modifying the environment.yml file as follows (from line 128):
# build the interactive terminal
- jupyterlab >=3.4,<4
- pip
- pip:
- jupyterlite==0.1.0b10
- sphinx-toggleprompt
- pandoc
After creating a new environment using the modified environment file, I then ran:
make clean
python setup.py build_ext -j 10
python -m pip install -e . --no-build-isolation --no-use-pep517
and the installation was successful. My version of pandas is now this one: 1.5.0.dev0+1285.g60b4400491.dirty.
I then ran:
pytest pandas -n auto
and I got 44 test failures. Here are some examples of the failures I got:
________________________________________________________________________ ERROR at setup of TestMySQLAlchemy.test_read_sql_parameter _________________________________________________________________________
[gw9] darwin -- Python 3.9.13 /Users/maren/mambaforge/envs/pandas-test/bin/python
self = <pymysql.connections.Connection object at 0x2c9cdc4c0>, sock = None
def connect(self, sock=None):
self._closed = False
try:
if sock is None:
if self.unix_socket:
sock = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM)
sock.settimeout(self.connect_timeout)
sock.connect(self.unix_socket)
self.host_info = "Localhost via UNIX socket"
self._secure = True
if DEBUG:
print("connected using unix_socket")
else:
kwargs = {}
if self.bind_address is not None:
kwargs["source_address"] = (self.bind_address, 0)
while True:
try:
> sock = socket.create_connection(
(self.host, self.port), self.connect_timeout, **kwargs
)
/Users/maren/mambaforge/envs/pandas-test/lib/python3.9/site-packages/pymysql/connections.py:613:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
address = ('localhost', 3306), timeout = 10, source_address = None
def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
source_address=None):
"""Connect to *address* and return the socket object.
Convenience function. Connect to *address* (a 2-tuple ``(host,
port)``) and return the socket object. Passing the optional
*timeout* parameter will set the timeout on the socket instance
before attempting to connect. If no *timeout* is supplied, the
global default timeout setting returned by :func:`getdefaulttimeout`
is used. If *source_address* is set it must be a tuple of (host, port)
for the socket to bind as a source address before making the connection.
A host of '' or port 0 tells the OS to use the default.
"""
host, port = address
err = None
for res in getaddrinfo(host, port, 0, SOCK_STREAM):
af, socktype, proto, canonname, sa = res
sock = None
try:
sock = socket(af, socktype, proto)
if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
sock.settimeout(timeout)
if source_address:
sock.bind(source_address)
sock.connect(sa)
# Break explicitly a reference cycle
err = None
return sock
except error as _:
err = _
if sock is not None:
sock.close()
if err is not None:
try:
> raise err
/Users/maren/mambaforge/envs/pandas-test/lib/python3.9/socket.py:844:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
address = ('localhost', 3306), timeout = 10, source_address = None
def create_connection(address, timeout=_GLOBAL_DEFAULT_TIMEOUT,
source_address=None):
"""Connect to *address* and return the socket object.
Convenience function. Connect to *address* (a 2-tuple ``(host,
port)``) and return the socket object. Passing the optional
*timeout* parameter will set the timeout on the socket instance
before attempting to connect. If no *timeout* is supplied, the
global default timeout setting returned by :func:`getdefaulttimeout`
is used. If *source_address* is set it must be a tuple of (host, port)
for the socket to bind as a source address before making the connection.
A host of '' or port 0 tells the OS to use the default.
"""
host, port = address
err = None
for res in getaddrinfo(host, port, 0, SOCK_STREAM):
af, socktype, proto, canonname, sa = res
sock = None
try:
sock = socket(af, socktype, proto)
if timeout is not _GLOBAL_DEFAULT_TIMEOUT:
sock.settimeout(timeout)
if source_address:
sock.bind(source_address)
> sock.connect(sa)
E ConnectionRefusedError: [Errno 61] Connection refused
/Users/maren/mambaforge/envs/pandas-test/lib/python3.9/socket.py:832: ConnectionRefusedError
During handling of the above exception, another exception occurred:
self = Engine(mysql+pymysql://root@localhost:3306/pandas), fn = <bound method Pool.connect of <sqlalchemy.pool.impl.QueuePool object at 0x2ca72ef40>>, connection = None
def _wrap_pool_connect(self, fn, connection):
dialect = self.dialect
try:
> return fn()
/Users/maren/mambaforge/envs/pandas-test/lib/python3.9/site-packages/sqlalchemy/engine/base.py:3361:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <sqlalchemy.pool.impl.QueuePool object at 0x2ca72ef40>
def connect(self):
"""Return a DBAPI connection from the pool.
The connection is instrumented such that when its
``close()`` method is called, the connection will be returned to
the pool.
"""
> return _ConnectionFairy._checkout(self)
Comment From: jorisvandenbossche
Regarding the pandoc installation issue: I don't think the PyPI package for pandoc actually includes pandoc itself, AFAIK it's only the python bindings, and you still need to install the library yourself (there are no wheels for this package that include that). So it might not be as simple as moving it to the pip section (although of course for you as long as you are not using it, it's fine to get a dev environment set up). More in general, we should maybe see if we actually need pandoc (since it is not that easy to install). From a quick look, I think we only use it for converting the notebooks in our docs with nbsphinx (in the past we also used it to convert contributing.rst to md, but that has been removed it seems). It might be viable to actually do that without pandoc. For example myst-parser and myst-nb also allow to include markdown files and notebooks in sphinx documentation, without dependency on pandoc AFAIK. (but so this is for another issue!)
@marenwestermann for the test failures: I think you only posted part of a single test failure traceback (those tend to be very long with pytest ..). Can you update that comment with some more output?
I think the general goal should be that there are no test failures if you have a full development environment (except for some things like no network connection).
Comment From: MarcoGorelli
Hey, just reading through this again
Looks like the first two issues brought up got resolved when the installation went through correctly. pandoc is just used for a single notebook (doc/source/user_guide/style.ipynb), so it's definitely not essential
Regarding running all tests, I'd suggest just adding a note there saying something like
If a handful of tests don't pass, it may not be an issue with your pandas installation. Some tests (e.g. some SQLAlchemy ones) require additional setup, others might start failing because a non-pinned library released a new version, and others might be flaky if run in parallel. As long as you can import pandas from your locally built version, your installation's probably fine and you can start contributing!
Comment From: marenwestermann
Sorry for not having followed up on this in the last few weeks. I'll have time to keep working on this from Friday this week. Thanks for your review @MarcoGorelli! I'll incorporate your feedback.
Comment From: marenwestermann
I finally had a look into this again. :) First of all, thank you very much @MarcoGorelli for updating the contributing guidelines. The documentation has much improved!
I followed the "Creating a development environment" instructions again. I'm now using my personal computer which has a Linux OS with the x86_64 architecture. (The Macbook mentioned above was my work computer which I had to return because I finished working at my last company).
I'm observing similar problems as described in my initial issue description at the top. I made a fresh clone of my fork of the pandas project and followed the instructions under Option 1a: using mamba (recommended). When I run python -m pip install -e . --no-build-isolation --no-use-pep517 I get the following errors:
(pandas-dev) maren@maren-ThinkPad-X220:~/open-source/pandas-maren$ python -m pip install -e . --no-build-isolation --no-use-pep517
Obtaining file:///home/maren/open-source/pandas-maren
Preparing metadata (setup.py) ... done
Requirement already satisfied: python-dateutil>=2.8.1 in /home/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.30317.gf2a91a0) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in /home/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.30317.gf2a91a0) (2022.4)
Requirement already satisfied: numpy>=1.20.3 in /home/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from pandas==0+untagged.30317.gf2a91a0) (1.23.3)
Requirement already satisfied: six>=1.5 in /home/maren/mambaforge/envs/pandas-dev/lib/python3.8/site-packages (from python-dateutil>=2.8.1->pandas==0+untagged.30317.gf2a91a0) (1.16.0)
Installing collected packages: pandas
Attempting uninstall: pandas
Found existing installation: pandas 1.5.0
Uninstalling pandas-1.5.0:
Successfully uninstalled pandas-1.5.0
Running setup.py develop for pandas
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
xarray 2022.9.0 requires pandas>=1.2, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
statsmodels 0.13.2 requires pandas>=0.25, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
seaborn 0.12.0 requires pandas>=0.25, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
pyreadstat 1.1.9 requires pandas>=1.2.0, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
pandas-gbq 0.17.9 requires pandas>=0.24.2, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
pandas-datareader 0.10.0 requires pandas>=0.23, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
mapclassify 2.4.3 requires pandas>=1.0, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
geopandas 0.11.1 requires pandas>=1.0.0, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
fastparquet 0.8.3 requires pandas>=1.1.0, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
db-dtypes 1.0.4 requires pandas<2.0dev,>=0.24.2, but you have pandas 0+untagged.30317.gf2a91a0 which is incompatible.
Successfully installed pandas-0+untagged.30317.gf2a91a0
This is the content of my conda enviroment:
(pandas-dev) maren@maren-ThinkPad-X220:~/open-source/pandas-maren$ conda list
# packages in environment at /home/maren/mambaforge/envs/pandas-dev:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
aiobotocore 1.4.1 pyhd8ed1ab_0 conda-forge
aiohttp 3.8.3 py38h0a891b7_0 conda-forge
aioitertools 0.11.0 pyhd8ed1ab_0 conda-forge
aiosignal 1.2.0 pyhd8ed1ab_0 conda-forge
alabaster 0.7.12 py_0 conda-forge
alsa-lib 1.2.7.2 h166bdaf_0 conda-forge
anyio 3.6.1 pyhd8ed1ab_1 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h0a891b7_2 conda-forge
arrow-cpp 9.0.0 py38h06d3c50_7_cpu conda-forge
asn1crypto 1.5.1 pyhd8ed1ab_0 conda-forge
asttokens 2.0.8 pyhd8ed1ab_0 conda-forge
asv 0.5.1 py38hfa26641_0 conda-forge
async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
aws-c-cal 0.5.11 h95a6274_0 conda-forge
aws-c-common 0.6.2 h7f98852_0 conda-forge
aws-c-event-stream 0.2.7 h3541f99_13 conda-forge
aws-c-io 0.10.5 hfb6a706_0 conda-forge
aws-checksums 0.1.11 ha31a3da_7 conda-forge
aws-sam-translator 1.53.0 pyhd8ed1ab_0 conda-forge
aws-sdk-cpp 1.8.186 hb4091e7_3 conda-forge
aws-xray-sdk 2.10.0 pyhd8ed1ab_0 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
backports.zoneinfo 0.2.1 py38h0a891b7_5 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
binutils 2.36.1 hdd6e379_2 conda-forge
binutils_impl_linux-64 2.36.1 h193b22a_2 conda-forge
binutils_linux-64 2.36 hf3e587d_10 conda-forge
black 22.3.0 pyhd8ed1ab_0 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blinker 1.5 pyhd8ed1ab_0 conda-forge
blosc 1.21.1 h83bc5f7_3 conda-forge
bokeh 2.4.3 pyhd8ed1ab_3 conda-forge
boost-cpp 1.78.0 h75c5d50_1 conda-forge
boto3 1.17.106 pyhd8ed1ab_0 conda-forge
botocore 1.20.106 pyhd8ed1ab_0 conda-forge
bottleneck 1.3.5 py38h71d37f0_0 conda-forge
branca 0.5.0 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h166bdaf_7 conda-forge
brotli-bin 1.0.9 h166bdaf_7 conda-forge
brotlipy 0.7.0 py38h0a891b7_1004 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
c-compiler 1.5.0 h166bdaf_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
cachetools 5.2.0 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py38h4a40e3a_0 conda-forge
cfgv 3.3.1 pyhd8ed1ab_0 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
cfn-lint 0.67.0 pyhd8ed1ab_0 conda-forge
cftime 1.6.2 py38h26c90d9_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 py38h578d9bd_0 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.7.2 pyhd8ed1ab_1 conda-forge
cloudpickle 2.2.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
contourpy 1.0.5 py38h43d8883_0 conda-forge
coverage 6.5.0 py38h0a891b7_0 conda-forge
cpplint 1.6.0 pyhd8ed1ab_0 conda-forge
cramjam 2.5.0 py38ha8db356_0 conda-forge
cryptography 38.0.2 py38h2b5fc30_0 conda-forge
curl 7.85.0 h7bff187_0 conda-forge
cxx-compiler 1.5.0 h924138e_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.32 py38hfa26641_0 conda-forge
cytoolz 0.12.0 py38h0a891b7_0 conda-forge
dask 2022.9.2 pyhd8ed1ab_0 conda-forge
dask-core 2022.9.2 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
db-dtypes 1.0.4 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.3 py38hfa26641_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
distlib 0.3.5 pyhd8ed1ab_0 conda-forge
distributed 2022.9.2 pyhd8ed1ab_0 conda-forge
docker-py 5.0.3 py38h578d9bd_2 conda-forge
docker-pycreds 0.4.0 py_0 conda-forge
docutils 0.17.1 py38h578d9bd_2 conda-forge
doit 0.36.0 pypi_0 pypi
ecdsa 0.18.0 pyhd8ed1ab_1 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.0.1 py_1001 conda-forge
exceptiongroup 1.0.0rc9 pyhd8ed1ab_0 conda-forge
execnet 1.9.0 pyhd8ed1ab_0 conda-forge
executing 1.1.1 pyhd8ed1ab_0 conda-forge
expat 2.4.9 h27087fc_0 conda-forge
fastavro 1.6.1 py38h0a891b7_0 conda-forge
fastparquet 0.8.3 py38h71d37f0_0 conda-forge
feedparser 6.0.10 pyhd8ed1ab_0 conda-forge
fftw 3.3.10 nompi_hf0379b8_105 conda-forge
filelock 3.8.0 pyhd8ed1ab_0 conda-forge
fiona 1.8.21 py38hd65b8f4_2 conda-forge
flake8 5.0.4 pyhd8ed1ab_0 conda-forge
flake8-bugbear 22.7.1 pyhd8ed1ab_0 conda-forge
flask 2.1.3 pyhd8ed1ab_0 conda-forge
flask_cors 3.0.10 pyhd3deb0d_0 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
folium 0.13.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 hc2a2eb6_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.37.4 py38h0a891b7_0 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
freexl 1.0.6 h166bdaf_1 conda-forge
frozenlist 1.3.1 py38h0a891b7_0 conda-forge
fsspec 2021.11.0 pyhd8ed1ab_0 conda-forge
gcc 10.4.0 hb92f740_10 conda-forge
gcc_impl_linux-64 10.4.0 h7ee1905_16 conda-forge
gcc_linux-64 10.4.0 h9215b83_10 conda-forge
gcsfs 2021.11.0 pyhd8ed1ab_0 conda-forge
gdal 3.5.2 py38h1f15b03_1 conda-forge
geopandas 0.11.1 pyhd8ed1ab_0 conda-forge
geopandas-base 0.11.1 pyha770c72_0 conda-forge
geos 3.11.0 h27087fc_0 conda-forge
geotiff 1.7.1 h4fc65e6_3 conda-forge
gettext 0.19.8.1 h27087fc_1009 conda-forge
gflags 2.2.2 he1b5a44_1004 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
gitdb 4.0.9 pyhd8ed1ab_0 conda-forge
gitpython 3.1.29 pyhd8ed1ab_0 conda-forge
glib 2.74.0 h6239696_0 conda-forge
glib-tools 2.74.0 h6239696_0 conda-forge
glog 0.6.0 h6f12383_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gmpy2 2.1.2 py38h8384b0a_0 conda-forge
google-api-core 2.10.2 pyhd8ed1ab_0 conda-forge
google-api-core-grpc 2.10.2 hd8ed1ab_0 conda-forge
google-auth 2.12.0 pyh1a96a4e_0 conda-forge
google-auth-oauthlib 0.5.3 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery 3.3.5 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery-core 3.3.5 pyhd8ed1ab_0 conda-forge
google-cloud-bigquery-storage 2.11.0 pyh6c4a22f_0 conda-forge
google-cloud-bigquery-storage-core 2.11.0 pyh6c4a22f_0 conda-forge
google-cloud-core 2.3.2 pyhd8ed1ab_0 conda-forge
google-cloud-storage 2.5.0 pyh6c4a22f_0 conda-forge
google-crc32c 1.1.2 py38h57c428a_3 conda-forge
google-resumable-media 2.4.0 pyhd8ed1ab_0 conda-forge
googleapis-common-protos 1.56.4 py38h578d9bd_0 conda-forge
graphql-core 3.2.3 pyhd8ed1ab_0 conda-forge
greenlet 1.1.3 py38hfa26641_0 conda-forge
grpc-cpp 1.47.1 h05bd8bd_6 conda-forge
grpcio 1.47.1 py38h7dc2bf5_6 conda-forge
grpcio-status 1.46.3 pyhd8ed1ab_0 conda-forge
gst-plugins-base 1.20.3 h57caac4_2 conda-forge
gstreamer 1.20.3 hd4edc92_2 conda-forge
gxx 10.4.0 hb92f740_10 conda-forge
gxx_impl_linux-64 10.4.0 h7ee1905_16 conda-forge
gxx_linux-64 10.4.0 h6e491c6_10 conda-forge
hdf4 4.2.15 h9772cbc_4 conda-forge
hdf5 1.12.2 nompi_h2386368_100 conda-forge
heapdict 1.0.1 py_0 conda-forge
html5lib 1.1 pyh9f0ad1d_0 conda-forge
hypothesis 6.56.2 py38h578d9bd_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
identify 2.5.6 pyhd8ed1ab_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.11.4 py38h578d9bd_0 conda-forge
importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge
importlib_resources 3.3.1 pyhd8ed1ab_1 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 6.16.0 pyh210e3f2_0 conda-forge
ipython 8.5.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge
isort 5.10.1 pyhd8ed1ab_0 conda-forge
itsdangerous 2.1.2 pyhd8ed1ab_0 conda-forge
jack 1.9.18 h8c3723f_1003 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.0.3 pypi_0 pypi
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h166bdaf_2 conda-forge
jschema-to-python 1.2.3 pyhd8ed1ab_0 conda-forge
json-c 0.16 hc379101_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsondiff 2.0.0 pyhd8ed1ab_0 conda-forge
jsonpatch 1.32 pyhd8ed1ab_0 conda-forge
jsonpickle 2.2.0 pyhd8ed1ab_0 conda-forge
jsonpointer 2.0 py_0 conda-forge
jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge
junit-xml 1.9 pyh9f0ad1d_0 conda-forge
jupyter_client 7.3.4 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py38h578d9bd_0 conda-forge
jupyter_server 1.21.0 pyhd8ed1ab_0 conda-forge
jupyterlab 3.4.8 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.15.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.3 pyhd8ed1ab_0 conda-forge
jupyterlite 0.1.0b12 pypi_0 pypi
kealib 1.4.15 ha7026e8_1 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py38h43d8883_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libabseil 20220623.0 cxx17_h48a1fff_4 conda-forge
libblas 3.9.0 16_linux64_mkl conda-forge
libbrotlicommon 1.0.9 h166bdaf_7 conda-forge
libbrotlidec 1.0.9 h166bdaf_7 conda-forge
libbrotlienc 1.0.9 h166bdaf_7 conda-forge
libcap 2.65 ha37c62d_0 conda-forge
libcblas 3.9.0 16_linux64_mkl conda-forge
libclang 14.0.6 default_h2e3cab8_0 conda-forge
libclang13 14.0.6 default_h3a83d3e_0 conda-forge
libcrc32c 1.1.2 h9c3ff4c_0 conda-forge
libcst 0.4.7 py38h4029515_0 conda-forge
libcups 2.3.3 h3e49a29_2 conda-forge
libcurl 7.85.0 h7bff187_0 conda-forge
libdap4 3.20.6 hd7c4107_2 conda-forge
libdb 6.2.32 h9c3ff4c_0 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.3.4 h27087fc_0 conda-forge
libgcc-devel_linux-64 10.4.0 h74af60c_16 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgdal 3.5.2 hc23bfc3_1 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libglib 2.74.0 h7a41b64_0 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libgoogle-cloud 2.2.0 h838d150_1 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libkml 1.3.0 h37653c0_1015 conda-forge
liblapack 3.9.0 16_linux64_mkl conda-forge
libllvm11 11.1.0 he0ac6c6_4 conda-forge
libllvm14 14.0.6 he0ac6c6_0 conda-forge
libnetcdf 4.8.1 nompi_h21705cb_104 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.38 h753d276_0 conda-forge
libpq 14.5 hd77ab85_0 conda-forge
libprotobuf 3.21.7 h6239696_0 conda-forge
librttopo 1.1.0 hf730bdb_11 conda-forge
libsanitizer 10.4.0 hde28e3b_16 conda-forge
libsndfile 1.0.31 h9c3ff4c_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libspatialindex 1.9.3 h9c3ff4c_4 conda-forge
libspatialite 5.0.1 hd36657c_19 conda-forge
libsqlite 3.39.4 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-devel_linux-64 10.4.0 h74af60c_16 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libthrift 0.16.0 h491838f_2 conda-forge
libtiff 4.4.0 h55922b4_4 conda-forge
libtool 2.4.6 h9c3ff4c_1008 conda-forge
libudev1 249 h166bdaf_4 conda-forge
libutf8proc 2.7.0 h7f98852_0 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.10.2 h7463322_2 conda-forge
libxslt 1.1.35 h8affb1d_0 conda-forge
libzip 1.9.2 hc869a4a_1 conda-forge
libzlib 1.2.12 h166bdaf_4 conda-forge
llvm-openmp 14.0.4 he0ac6c6_0 conda-forge
llvmlite 0.39.1 py38h38d86a4_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lxml 4.9.1 py38h0a891b7_0 conda-forge
lz4 4.0.0 py38h1bf946c_2 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mapclassify 2.4.3 pyhd8ed1ab_0 conda-forge
markdown 3.4.1 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.1 py38h0a891b7_1 conda-forge
matplotlib 3.6.1 py38h578d9bd_0 conda-forge
matplotlib-base 3.6.1 py38hb021067_0 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mccabe 0.7.0 pyhd8ed1ab_0 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
mkl 2022.1.0 h84fe81f_915 conda-forge
moto 4.0.7 pyhd8ed1ab_0 conda-forge
mpc 1.2.1 h9f54685_0 conda-forge
mpfr 4.1.0 h9202a9a_1 conda-forge
msgpack-python 1.0.4 py38h43d8883_0 conda-forge
multidict 6.0.2 py38h0a891b7_1 conda-forge
munch 2.5.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy 0.981 py38h0a891b7_0 conda-forge
mypy_extensions 0.4.3 py38h578d9bd_5 conda-forge
mysql-common 8.0.31 haf5c9bc_0 conda-forge
mysql-libs 8.0.31 h28c427c_0 conda-forge
natsort 8.2.0 pyhd8ed1ab_0 conda-forge
nbclassic 0.4.5 pyhd8ed1ab_0 conda-forge
nbclient 0.7.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.2.1 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.2.1 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.2.1 pyhd8ed1ab_0 conda-forge
nbformat 5.7.0 pyhd8ed1ab_0 conda-forge
nbsphinx 0.8.9 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
networkx 2.8.7 pyhd8ed1ab_0 conda-forge
ninja 1.11.0 h924138e_0 conda-forge
nodeenv 1.7.0 pyhd8ed1ab_0 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
notebook-shim 0.1.0 pyhd8ed1ab_0 conda-forge
nspr 4.32 h9c3ff4c_1 conda-forge
nss 3.78 h2350873_0 conda-forge
numba 0.56.2 py38h9a4aae9_1 conda-forge
numexpr 2.8.3 mkl_py38h9924f95_0 conda-forge
numpy 1.23.3 py38h3a7f9d9_0 conda-forge
numpydoc 1.5.0 pyhd8ed1ab_0 conda-forge
oauthlib 3.2.1 pyhd8ed1ab_0 conda-forge
odfpy 1.4.1 py_0 conda-forge
openapi-schema-validator 0.2.3 pyhd8ed1ab_0 conda-forge
openapi-spec-validator 0.4.0 pyhd8ed1ab_1 conda-forge
openjpeg 2.5.0 h7d73246_1 conda-forge
openpyxl 3.0.10 py38h0a891b7_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
orc 1.8.0 h09e0d61_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 0+untagged.30317.gf2a91a0 dev_0 <develop>
pandas-datareader 0.10.0 pyh6c4a22f_0 conda-forge
pandas-dev-flaker 0.5.0 pyhd8ed1ab_0 conda-forge
pandas-gbq 0.17.9 pyh1a96a4e_0 conda-forge
pandoc 2.19.2 ha770c72_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parquet-cpp 1.5.1 2 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.3.0 pyhd8ed1ab_0 conda-forge
pathspec 0.10.1 pyhd8ed1ab_0 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pbr 5.10.0 pyhd8ed1ab_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pcre2 10.37 hc3806b6_1 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py38ha3b2c9c_2 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
platformdirs 2.5.2 pyhd8ed1ab_1 conda-forge
pluggy 1.0.0 py38h578d9bd_3 conda-forge
ply 3.11 py_1 conda-forge
poppler 22.04.0 h0733791_3 conda-forge
poppler-data 0.4.11 hd8ed1ab_0 conda-forge
portaudio 19.6.0 h8e90077_6 conda-forge
postgresql 14.5 hfdbbde3_0 conda-forge
pre-commit 2.20.0 py38h578d9bd_0 conda-forge
proj 9.0.1 h93bde94_1 conda-forge
prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.31 pyha770c72_0 conda-forge
proto-plus 1.22.1 pyhd8ed1ab_0 conda-forge
protobuf 4.21.7 py38hfa26641_0 conda-forge
psutil 5.9.2 py38h0a891b7_0 conda-forge
psycopg2 2.9.3 py38h497a2fe_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pulseaudio 14.0 h0868958_9 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
py 1.11.0 pyh6c4a22f_0 conda-forge
pyarrow 9.0.0 py38h8617f3d_7_cpu conda-forge
pyasn1 0.4.8 py_0 conda-forge
pyasn1-modules 0.2.7 py_0 conda-forge
pycodestyle 2.9.1 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydata-google-auth 1.4.0 pyhd8ed1ab_0 conda-forge
pydata-sphinx-theme 0.10.1 pyhd8ed1ab_0 conda-forge
pyflakes 2.5.0 pyhd8ed1ab_0 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.5.0 pyhd8ed1ab_0 conda-forge
pymysql 1.0.2 pyhd8ed1ab_0 conda-forge
pyopenssl 22.1.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyproj 3.4.0 py38he1635e7_0 conda-forge
pyqt 5.15.7 py38h7492b6b_0 conda-forge
pyqt5-sip 12.11.0 py38hfa26641_0 conda-forge
pyreadstat 1.1.9 py38he5536e0_1 conda-forge
pyrsistent 0.18.1 py38h0a891b7_1 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.7.0 py38hf632491_2 conda-forge
pytest 7.1.3 py38h578d9bd_0 conda-forge
pytest-asyncio 0.19.0 pyhd8ed1ab_0 conda-forge
pytest-cov 4.0.0 pyhd8ed1ab_0 conda-forge
pytest-cython 0.2.0 pyhd8ed1ab_0 conda-forge
pytest-forked 1.4.0 pyhd8ed1ab_0 conda-forge
pytest-xdist 2.5.0 pyhd8ed1ab_0 conda-forge
python 3.8.13 h582c2e5_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python-jose 3.3.0 pyh6c4a22f_1 conda-forge
python-snappy 0.6.0 py38h1ddbb56_2 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytorch 1.12.1 cpu_py38h23e632a_1 conda-forge
pytz 2022.4 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pyupgrade 3.1.0 pyhd8ed1ab_0 conda-forge
pyxlsb 1.0.9 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py38h0a891b7_4 conda-forge
pyzmq 24.0.1 py38hfc09fa9_0 conda-forge
qt-main 5.15.6 hc525480_0 conda-forge
re2 2022.06.01 h27087fc_0 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
requests-oauthlib 1.3.1 pyhd8ed1ab_0 conda-forge
responses 0.21.0 pyhd8ed1ab_0 conda-forge
rsa 4.9 pyhd8ed1ab_0 conda-forge
rtree 1.0.0 py38h02d302b_1 conda-forge
s2n 1.0.10 h9b69904_0 conda-forge
s3fs 2021.11.0 pyhd8ed1ab_0 conda-forge
s3transfer 0.4.2 pyhd8ed1ab_0 conda-forge
sarif-om 1.0.4 pyhd8ed1ab_0 conda-forge
scikit-learn 1.1.2 py38h0b08f9b_0 conda-forge
scipy 1.9.1 py38hea3f02b_0 conda-forge
seaborn 0.12.0 hd8ed1ab_0 conda-forge
seaborn-base 0.12.0 pyhd8ed1ab_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 65.4.1 pyhd8ed1ab_0 conda-forge
sgmllib3k 1.0.0 pyh9f0ad1d_0 conda-forge
shapely 1.8.4 py38h3b45516_0 conda-forge
sip 6.6.2 py38hfa26641_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleef 3.5.1 h9b69904_2 conda-forge
smmap 3.0.5 pyh44b312d_0 conda-forge
snappy 1.1.9 hbd366e4_1 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sphinx 4.5.0 pyh6c4a22f_0 conda-forge
sphinx-copybutton 0.5.0 pyhd8ed1ab_0 conda-forge
sphinx-panels 0.6.0 pyhd8ed1ab_0 conda-forge
sphinx-toggleprompt 0.2.0 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
sqlalchemy 1.4.41 py38h0a891b7_0 conda-forge
sqlite 3.39.4 h4ff8645_0 conda-forge
sshpubkeys 3.3.1 pyhd8ed1ab_0 conda-forge
stack_data 0.5.1 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py38h71d37f0_0 conda-forge
sysroot_linux-64 2.12 he073ed8_15 conda-forge
tabulate 0.9.0 pyhd8ed1ab_1 conda-forge
tbb 2021.6.0 h924138e_0 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
terminado 0.16.0 pyh41d4057_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tiledb 2.11.3 h1e4a385_0 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tokenize-rt 5.0.0 pyhd8ed1ab_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.1 py38h0a891b7_3 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.4.0 pyhd8ed1ab_0 conda-forge
typed-ast 1.5.4 py38h0a891b7_0 conda-forge
types-pymysql 1.0.19 pyhd8ed1ab_0 conda-forge
types-python-dateutil 2.8.19 pyhd8ed1ab_0 conda-forge
types-pytz 2022.4.0.0 pyhd8ed1ab_0 conda-forge
types-setuptools 65.4.0.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
typing_inspect 0.7.1 pyh6c4a22f_0 conda-forge
tzcode 2022e h166bdaf_0 conda-forge
tzdata 2022e h191b570_0 conda-forge
ukkonen 1.0.1 py38h43d8883_2 conda-forge
unicodedata2 14.0.0 py38h0a891b7_1 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
virtualenv 20.16.5 py38h578d9bd_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.4.1 pyhd8ed1ab_0 conda-forge
werkzeug 2.1.2 pyhd8ed1ab_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 py38h0a891b7_0 conda-forge
xarray 2022.9.0 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 h166bdaf_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h166bdaf_0 conda-forge
xcb-util-renderutil 0.3.9 h166bdaf_0 conda-forge
xcb-util-wm 0.4.1 h166bdaf_0 conda-forge
xerces-c 3.2.3 h55805fa_5 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xlsxwriter 3.0.3 pyhd8ed1ab_0 conda-forge
xlwt 1.3.0 py_1 conda-forge
xmltodict 0.13.0 pyhd8ed1ab_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xyzservices 2022.9.0 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yarl 1.7.2 py38h0a891b7_2 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zict 2.2.0 pyhd8ed1ab_0 conda-forge
zipp 3.9.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 h166bdaf_4 conda-forge
zstandard 0.18.0 py38h0a891b7_0 conda-forge
zstd 1.5.2 h6239696_4 conda-forge
When I do a git describe the output is "fatal: No names found, cannot describe anything." This implies that I might have created a shallow clone as already suggested by @jorisvandenbossche , however, I did a regular git clone without the --depth option. I am at the latest commit (f2a91a0ed8c2f9198b39860c987a59cbdbcd9999).
I haven't spent much time investigating the issue yet, but will do this now. I just thought I'll post an update as you might have ideas why this is happening, especially given that I'm now on a different machine with a different architecture.
Comment From: MarcoGorelli
thanks - no idea I'm afraid, I tried again in a new repo, also on Linux x86_64, and it worked fine. But if git describe fails, to me that suggests the clone didn't work properly, I'd try deleting the repo and cloning it again, something like
cd ~/open-source
rm -rf pandas-maren
conda env remove -n pandas-dev
git clone git@github.com:pandas-dev/pandas.git pandas-maren
cd pandas-maren
git describe
If that looks fine, then
mamba env create
conda activate pandas-dev
python setup.py build_ext -j 12 # or 4, or however many cores you have / want to use
python -m pip install -e . --no-build-isolation --no-use-pep517
Comment From: jorisvandenbossche
When I do a
git describethe output is "fatal: No names found, cannot describe anything." This implies that I might have created a shallow clone as already suggested by @jorisvandenbossche , however, I did a regulargit clonewithout the--depthoption. I am at the latest commit (f2a91a0ed8c2f9198b39860c987a59cbdbcd9999).
I think this error indicates that you simply don't have any tags in your local clone. That also matches with the version you see "pandas-0+untagged.30317.gf2a91a0", so it seems you did a full clone (otherwise it wouldn't know there are 30317 commits since the start of pandas), but without downloading any tags.
That is still strange how you got that, because the default for git clone is to also download the tags. I could reproduce your error by explicitly asking to not get the tags:
$ git clone https://github.com/pandas-dev/pandas.git pandas-test --no-tags
Cloning into 'pandas-test'...
...
$ cd pandas-test
pandas-test$ git describe
fatal: No names found, cannot describe anything.
And if doing a shallow clone (with --depth 1 instead of --no-tags), I get the same error, but then you don't have those 30317 commits in the history.
If you don't have tags, you can still get them after cloning (https://stackoverflow.com/a/60883893/653364). But it is strange why you don't have them to begin with. One thing I can think of is that for some reason you have some configuration of git to now fetch tags by default.
Comment From: marenwestermann
Thank you @MarcoGorelli and @jorisvandenbossche for your replies! I finally managed to successfully install the development version of pandas, hooray! The pandas version that I now have is 2.0.0.dev0+398.g52acf970cd. I followed the instructions given by @MarcoGorelli above. The only thing I did differently compared to before is that I cloned directly from the pandas repo (as instructed) instead of from my own fork. Last time I did sync my fork with the main repository before cloning. However, it seems like there was something wrong with my fork. I'm now proceeding to check the tests.
Comment From: jorisvandenbossche
The only thing I did differently compared to before is that I cloned directly from the pandas repo (as instructed) instead of from my own fork.
Aha, that explains it! It seems that github nowadays doesn't include tags when forking: https://github.com/marenwestermann/pandas/tags is empty.
So if you then clone from your fork, you indeed don't have tags, and then it is expected you get this pandas-0+untagged.... version.
We should probably mention that somewhere in our contributing docs as a FAQ / gotcha that if you run into this kind of version string, this is probably the reason.
Comment From: MarcoGorelli
I think it should be enough to just add
git fetch upstream
to the end of this section
git clone https://github.com/your-user-name/pandas.git pandas-yourname
cd pandas-yourname
git remote add upstream https://github.com/pandas-dev/pandas.git
here https://pandas.pydata.org/docs/dev/development/contributing.html#forking
Comment From: marenwestermann
I saw that the documentation has been further improved which is great to see. I ran pytest pandas again and all the test failures I got were related to SQL which was expected given that I didn't set up a database:
=============================================================================== short test summary info ================================================================================
FAILED pandas/tests/io/test_sql.py::test_to_sql[None-mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
FAILED pandas/tests/io/test_sql.py::test_to_sql[None-mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
FAILED pandas/tests/io/test_sql.py::test_to_sql[None-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (...
FAILED pandas/tests/io/test_sql.py::test_to_sql[None-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
FAILED pandas/tests/io/test_sql.py::test_to_sql[multi-mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
FAILED pandas/tests/io/test_sql.py::test_to_sql[multi-mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'lo...
FAILED pandas/tests/io/test_sql.py::test_to_sql[multi-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
FAILED pandas/tests/io/test_sql.py::test_to_sql[multi-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[replace-1-mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for use...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[replace-1-mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user ...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[replace-1-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "l...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[replace-1-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "loc...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[append-2-mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[append-2-mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user '...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[append-2-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "lo...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist[append-2-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "loca...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist_fail[mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist_fail[mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist_fail[postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localh...
FAILED pandas/tests/io/test_sql.py::test_to_sql_exist_fail[postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhos...
FAILED pandas/tests/io/test_sql.py::test_read_iris[mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
FAILED pandas/tests/io/test_sql.py::test_read_iris[mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
FAILED pandas/tests/io/test_sql.py::test_read_iris[postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
FAILED pandas/tests/io/test_sql.py::test_read_iris[postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127....
FAILED pandas/tests/io/test_sql.py::test_to_sql_callable[mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root...
FAILED pandas/tests/io/test_sql.py::test_to_sql_callable[mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
FAILED pandas/tests/io/test_sql.py::test_to_sql_callable[postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhos...
FAILED pandas/tests/io/test_sql.py::test_to_sql_callable[postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost"...
FAILED pandas/tests/io/test_sql.py::test_default_type_conversion[mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for us...
FAILED pandas/tests/io/test_sql.py::test_default_type_conversion[mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user...
FAILED pandas/tests/io/test_sql.py::test_read_procedure[mysql_pymysql_engine] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'...
FAILED pandas/tests/io/test_sql.py::test_read_procedure[mysql_pymysql_conn] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
FAILED pandas/tests/io/test_sql.py::test_copy_from_callable_insertion_method[2-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection ...
FAILED pandas/tests/io/test_sql.py::test_copy_from_callable_insertion_method[2-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to...
FAILED pandas/tests/io/test_sql.py::test_copy_from_callable_insertion_method[Success!-postgresql_psycopg2_engine] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) conn...
FAILED pandas/tests/io/test_sql.py::test_copy_from_callable_insertion_method[Success!-postgresql_psycopg2_conn] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connec...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_sql_parameter - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_sql_named_parameter - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user '...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_to_sql_empty - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_create_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_drop_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localho...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localhos...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_execute_sql - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localh...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localho...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_table_columns - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_table_absent_raises - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user '...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_bigint - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localhost'")
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_default_date_load - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime_with_timezone - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime_with_timezone_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied fo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_out_of_bounds_datetime - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_naive_datetimeindex_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for u...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_date_parsing - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localhost'")
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime_NaT - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime_date - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loca...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_datetime_time - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loca...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_mixed_dtype_insert - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_nan_numeric - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localh...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_nan_fullcolumn - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_nan_string - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localho...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_to_sql_save_index - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_transactions - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_get_schema_create_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'r...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_dtype - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localhost'")
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_notna_dtype - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localh...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_double_precision - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_connectable_issue_example - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user ...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_to_sql_with_negative_npinf[input0] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied ...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_to_sql_with_negative_npinf[input1] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied ...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_to_sql_with_negative_npinf[input2] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied ...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_temporary_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'lo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_invalid_engine - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_options_sqlalchemy - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_options_auto - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_options_get_engine - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_get_engine_auto_error_message - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for u...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_default_type_conversion - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'r...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_sql_parameter - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_sql_named_parameter - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for us...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql_empty - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_create_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_drop_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loca...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_execute_sql - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'lo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_table_columns - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_table_absent_raises - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for us...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_bigint - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localho...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_default_date_load - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'roo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime_with_timezone - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime_with_timezone_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denie...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_out_of_bounds_datetime - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_naive_datetimeindex_roundtrip - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied f...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_date_parsing - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'local...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime_NaT - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime_date - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_datetime_time - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_mixed_dtype_insert - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_nan_numeric - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'lo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_nan_fullcolumn - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_nan_string - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'loc...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql_save_index - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'roo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_get_schema_create_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for use...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_dtype - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'localhos...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_notna_dtype - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'lo...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_double_precision - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_connectable_issue_example - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for u...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql_with_negative_npinf[input0] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access den...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql_with_negative_npinf[input1] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access den...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql_with_negative_npinf[input2] - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access den...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_temporary_table - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_invalid_engine - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_options_sqlalchemy - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_options_auto - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'root'@'l...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_options_get_engine - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for user 'ro...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_get_engine_auto_error_message - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied f...
ERROR pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_default_type_conversion - sqlalchemy.exc.OperationalError: (pymysql.err.OperationalError) (1698, "Access denied for use...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_read_sql_parameter - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_read_sql_named_parameter - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "local...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_to_sql_empty - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_create_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_drop_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_execute_sql - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_read_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_read_table_columns - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_read_table_absent_raises - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "local...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_default_type_conversion - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localh...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_bigint - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0.1),...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_default_date_load - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime_with_timezone - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime_with_timezone_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server a...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_out_of_bounds_datetime - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_naive_datetimeindex_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_date_parsing - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0.1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime_NaT - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime_date - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_datetime_time - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_mixed_dtype_insert - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_nan_numeric - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_nan_fullcolumn - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_nan_string - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_to_sql_save_index - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_transactions - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_get_schema_create_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localh...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_dtype - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0.1), ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_notna_dtype - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_double_precision - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_connectable_issue_example - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "loca...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_to_sql_with_negative_npinf[input0] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_to_sql_with_negative_npinf[input1] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_to_sql_with_negative_npinf[input2] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_temporary_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_invalid_engine - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_options_sqlalchemy - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_options_auto - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_options_get_engine - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_get_engine_auto_error_message - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_schema_support - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_read_sql_parameter - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_read_sql_named_parameter - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "l...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_to_sql_empty - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_create_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_drop_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_execute_sql - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_read_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_read_table_columns - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_read_table_absent_raises - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "l...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_default_type_conversion - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "lo...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_bigint - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_default_date_load - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhos...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime_with_timezone - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "loc...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime_with_timezone_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to serv...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_out_of_bounds_datetime - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "loc...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_naive_datetimeindex_roundtrip - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_date_parsing - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime_NaT - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime_date - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_datetime_time - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_mixed_dtype_insert - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_nan_numeric - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_nan_fullcolumn - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_nan_string - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_to_sql_save_index - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhos...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_get_schema_create_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "lo...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_dtype - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (127.0.0....
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_notna_dtype - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (12...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_double_precision - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_connectable_issue_example - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_to_sql_with_negative_npinf[input0] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to se...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_to_sql_with_negative_npinf[input1] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to se...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_to_sql_with_negative_npinf[input2] - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to se...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_temporary_table - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost"...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_invalid_engine - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_options_sqlalchemy - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_options_auto - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" (1...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_options_get_engine - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localho...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_get_engine_auto_error_message - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server ...
ERROR pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn::test_schema_support - sqlalchemy.exc.OperationalError: (psycopg2.OperationalError) connection to server at "localhost" ...
=================================== 36 failed, 189009 passed, 1737 skipped, 3591 xfailed, 10 xpassed, 417 warnings, 168 errors in 4511.15s (1:15:11) ===================================
Two examples of full test failures can be seen here: https://gist.github.com/marenwestermann/b27f060f2c95697fdcf8cf83402712a8 https://gist.github.com/marenwestermann/a52886e068ce0b7894051d8bbd9ddf06
I then ran pytest pandas/tests/io/test_sql.py -m "not db" in order to check if I get any test failures this way but all tests were successful. The command "not db" is mentioned in the documentation here but only in relation to speed. Should it be explicitly mentioned in the documentation that pytest pandas will result in test failures if people didn't set up a database?
I also ran pytest pandas -n auto to check if parallelisation causes problems but I currently don't get any additional test failures. (I did get an additional test failure related to memory usage recently but that seems to be fixed now).
Should I open an issue for mentioning the tag problem in the contributing docs as suggested by @jorisvandenbossche or is there already one?
Last but not least, sorry for the slow communication. I changed jobs recently and are slowly a bit more settled in which means I have a bit more time again now and can respond quicker. :)
Comment From: marenwestermann
I just followed the updated "Contributing to pandas" documentation which now includes git fetch upstream in this section (see comment by @MarcoGorelli above) and the installation process was successful. So I guess there is no need for mentioning the tag problem that I ran into earlier in the documentation.
Comment From: MarcoGorelli
Yeah agreed - if you want to add the note suggested in https://github.com/pandas-dev/pandas/issues/48060#issuecomment-1260641776, I think that'd be helpful. Else I think we can close, I've opened https://github.com/pandas-dev/pandas/issues/49797 mentioning the pandoc issue
Comment From: jorisvandenbossche
As I mentioned before, I think our goal should still be that the tests "pass" by default (if you followed the instructions to create a dev environment), meaning that the SQL tests should automatically skip if you don't have a database set up.
I don't know if that is easy (because we also don't want to silently skip those tests on CI if for example something goes wrong with the database set up, so we would need a way to force them being run on CI?)
Comment From: MarcoGorelli
Agreed, but in the meantime I think it's helpful to have a note so that new contributors aren't confused if they see some test failures
Comment From: jorisvandenbossche
Certainly! Just want to ensure we keep track of that we can actually improve the situation, will open a new issue for it
Comment From: jorisvandenbossche
-> https://github.com/pandas-dev/pandas/issues/50009
Comment From: phershbe
Sorry, I deleted my comment from the link above, what I wanted to say though was that I also had the same issue as Maren where the tags weren't updated because I wasn't forking properly, and the conversation above saved me.